196 papers
Bioengineering sits at the vibrant intersection of biology and engineering, where scientists design new tools to understand life and solve real-world problems. From creating artificial organs to developing smart materials that mimic natural tissues, this field turns complex biological questions into tangible innovations that improve human health and our environment.
At Gist.Science, we track every new preprint in this category directly from bioRxiv. Our team processes each submission to provide both plain-language explanations for curious minds and detailed technical summaries for researchers, ensuring these cutting-edge discoveries are accessible to everyone. Below are the latest papers in bioengineering that have recently appeared on bioRxiv.
This paper introduces SLEEC, a semi-supervised learning framework that leverages multiple sequence alignment-based data augmentation to achieve state-of-the-art enzyme classification performance while providing interpretable residue-level annotations and robustness to common sequence modifications.
This paper introduces an AI-powered, label-free pipeline using Holo-Tomographic Flow Cytometry and fractal analysis to profile the co-occurrence and severity of multiple morphological phenotypes in vacuolated cells through a unique 7-digit classification code.
The Virtual Immersion in Biomedical Engineering (VIBE) program provides a scalable, free, and inclusive online platform that enables undergraduate students worldwide to develop engineering design skills and global competencies through collaborative, culturally sensitive virtual experiences.
The authors introduce CARBONITE, a scalable single-cell imaging framework that pairs live calcium dynamics with protein expression to reveal that cardiomyocyte identity and functional heterogeneity are driven by factors such as nuclear state rather than just canonical subtype markers.
This study demonstrates that flexible polyimide probes cause significantly less tissue damage and immune reactivity than stiff silicon probes in mouse cerebral cortex, highlighting the critical role of material flexibility and implantation depth in optimizing long-term neurodevice integration.
Ligify 2.0 is an interactive web server that expands the Ligify bioinformatic method to predict over 13,000 transcription factor-small molecule interactions, providing comprehensive visualization tools, plasmid design capabilities, and experimentally validated biosensor candidates for pathogenic bacteria to facilitate the development of chemical-controlled biological systems.
This study demonstrates that a 1D U-Net deep learning model can accurately estimate sagittal plane ankle and knee joint angles from surface electromyography signals in typically developing children, offering a portable and non-invasive alternative to traditional motion capture systems for pediatric gait assessment.
This paper introduces an efficient, few-shot directed evolution method that adapts large-scale pre-trained protein language models using a statistical physics-based post-training algorithm to generate diverse, high-fitness protein sequences from sparse experimental rankings while providing interpretable insights into their biophysical properties.
Mechanistic simulations reveal that the brain's microvascular network organization and hemodynamic perfusion provide intrinsic oxygen transport reserves that protect cortical tissue from hypoxia, although age-related declines in arterial saturation and capillary flow stalling can compromise this resilience.
By screening over 1,200 natural intracellular domains in CAR T-cells, this study reveals that immunophenotype differentiation is determined not by individual signaling motifs but by the integrated combinatorial output of multiple motifs within costimulatory domains, providing a new framework for rational CAR engineering.