replicateFest: An R Package and Shiny App for Analysis of T Cell Receptor Repertoire Data from the Functional Expansion
The paper introduces replicateFest, an R package and Shiny web application designed to analyze T cell receptor repertoire data from Functional Expansion of Specific T cell (FEST) assays by employing statistical models that account for biological and technical replicates to robustly identify antigen-specific clonotypes.