🧬 biology

Chromosome-Scale Genome Assemblies of Two Black Bengal Goat (Capra hircus) Individuals

This study presents the first chromosome-scale genome assemblies for two Black Bengal Goat individuals, generated using PacBio HiFi sequencing and RNA-seq-based annotation, providing a high-quality reference resource to support future comparative genomics, breeding, and conservation efforts for this economically important South Asian breed.

Sharadindu Shil, Gouri Shankar Koner, Manoranjan Roy, Biswajit Saha, Diganta Pan, Jayanta Chowdhury, Anusuya Debnath, Ay (…)2026-10-30
🧬 biology

EV-PROTEOMICS: A Database-Driven Computational Framework for Refining Extracellular Vesicle-Associated Protein Profiles in Genotoxicity and Carcinogenicity Research

This paper introduces EV-PROTEOMICS, a database-driven computational framework that utilizes a subtractive refinement strategy to significantly enhance the clarity and mechanistic relevance of extracellular vesicle-associated protein profiles for identifying genotoxic and carcinogenic signatures.

Nathalia Stephanie Oliveira Nascimento, Adriana Oliveira Costa, Wildiner Bruno Pereira Gonçalves, Barbara Marra Rebuiti (…)2026-10-30
🧬 biology

Integrating bulk transcriptomics and single-cell RNA sequencing reveals protein secretion pathway genes and regulatory mechanisms in osteoporosis

By integrating bulk and single-cell transcriptomic data with machine learning and experimental validation, this study identifies PPWD1 and TMEM50B as key upregulated genes in the protein secretion pathway of osteoporosis, linking them to proteostasis dysregulation and bone marrow mesenchymal stem cell alterations.

Limin He, Po Yang, Dandan Wang, Tietao Di, Yan Jiang2026-10-30
🧬 biology

The Invisible Infrastructure of Biomedical Research: An Exploratory Analysis of Software Mentions and Sentence-Level Citation Marking

This exploratory analysis of nearly 800,000 software mentions in biomedical papers reveals that sentence-level citation marking is generally low (10.7%) and varies significantly by tool type, with statistical packages being cited least frequently, highlighting the need for targeted policy interventions and improved validation methods.

Md Motasim billa2026-10-30
🧬 biology

Sacred Grove Soil as a Novel Source of Protease-Producing Alishewanella aestuarii B11: A First Report from North Gujarat, India

This study reports the first isolation of a highly protease-producing *Alishewanella aestuarii* strain (B11) from sacred grove soils in North Gujarat, India, which was identified and optimized to yield significantly enhanced enzyme activity suitable for industrial applications.

Dhaval Prajapati, Zeel Gaikwada, Khushalika Patil, R G Chaudhari, S A Bhatt2026-10-30
🧬 biology

Integrative Analysis of Sialylation and Amino Acid Metabolism Signatures Reveals Prognostic Drivers and Immunotherapy Responses in Colorectal Cancer

This study integrates sialylation and amino acid metabolism signatures to develop a six-gene prognostic model for colorectal cancer that stratifies patients by risk, reveals distinct immune-metabolic tumor microenvironments, and identifies PLOD3 as a critical driver of tumor progression and a potential therapeutic target.

Yuanzi Zhou, Xiao Feng, Tianyao Yu, Cunyu Zhang, Nan Yi, Linglong Zhang, Xindong Yin, Su Zhou2026-10-30
🧬 biology

Cholesterol Complexes of Redox-Active Nanoparticles Affect Redox Balance and Viability of Fibrosarcoma and Metastatic Bladder Cancer Cells

This study demonstrates that cholesterol-based supramolecular complexes incorporating redox-active CeO₂₋ₓ nanoparticles and menadione significantly enhance the anticancer efficacy of pharmacological ascorbic acid by inducing severe redox imbalance and cell death in fibrosarcoma and metastatic bladder cancer cells, outperforming GdYVO₄:Eu³⁺ nanoparticles due to superior ROS generation capabilities.

Nataliya Kavok, Galyna Dudetskaya, Vladyslav Seminko, Pavel Maksimchuk, Yurii Kot, Olga Sedyh, Vladimir Klochkov, Svitla (…)2026-10-30