🧬 biology

Prevotella stercorea links gut microbiome ecology to respiratory infection protection through a host-context-dependent, species-autonomous pathway

In a longitudinal study of Gambian children, *Prevotella stercorea* is shown to protect against acute respiratory infections through a species-autonomous, host-context-dependent pathway that operates independently of overall gut microbiome richness, with its protective effects and immune interactions varying significantly based on the child's nutritional status (WAZ).

Ogochukwu Ofordile2026-07-20
🧬 biology

Systematic benchmarking of methods to analyze RNA editing in single-cell transcriptomes

This study establishes a systematic framework for analyzing A-to-I RNA editing in single-cell transcriptomes by benchmarking diverse methods across over 1.1 million cells, identifying BCFtools with strand annotation as the optimal pipeline, and demonstrating how these tools reveal cell-type-specific editing dynamics reshaped by disease contexts like Down syndrome and cancer.

Meng How Tan, Yan Ting Ng2026-07-20
🧬 biology

The analysis of genetic variants in nine patients with Nemaline Myopathy: Implications for diagnosis and genetic counseling

This study retrospectively analyzed nine Nemaline Myopathy patients using whole-exome sequencing and bioinformatics to identify pathogenic variants in *TPM3*, *NEB*, and *ACTA1* genes, demonstrating how thermodynamic stability analysis of *NEB* missense variants can enhance diagnosis, prognosis, and genetic counseling for this genetically heterogeneous disorder.

Bingbo Zhou, Chuan Zhang, Xiaojuan Lin, Panpan Ma, Yupei Wang, Lei Zheng, Shengju Hao, Ling Hui, Yunfei Bai2026-07-20
🧬 biology

Z-DNA-induced genomic instability in the human pangenome

By leveraging long-read sequencing and the human pangenome, this study demonstrates that Z-DNA-forming sequences are highly constrained, enriched in previously unresolved repetitive regions, and act as significant drivers of genomic instability through an excess of small insertions, deletions, and complex structural variants.

Georgios Megalovasilis, Eleftherios Bochalis, Dionysios Chartoumpekis, Karen Vasquez, Ilias Georgakopoulos-Soares2026-07-20
🧬 biology

Nested spatial filters structure the multi-scale distribution of Varroa destructor in overwintering honey bee (Apis mellifera) colonies

By utilizing cryofixation to preserve overwintering honey bee colonies in a near-native state, this study reveals that the multi-scale distribution of *Varroa destructor* is structured by nested spatial filters ranging from colony-level zones and frame positions to specific abdominal attachment sites on individual bees.

Minwoong Son, Heeji Kim, Dong Hee Lee, Sung-Kuk Kim, Su Jin Lee, Kyu-Won Kwak, Su-bae Kim, Kyeong Yong Lee, Bo-Sun Park2026-07-20
🧬 biology

When Simpler Models Win: A Calibration Benchmark of scGPT for Cell-Type Annotation

This study demonstrates that classical machine learning models trained on matched gene sets consistently match or outperform scGPT-based pipelines in both accuracy and statistical calibration for cell-type annotation across six large-scale single-cell atlases, challenging the assumed superiority of single-cell large language models without rigorous matched baselines.

Alireza Khosravi, Arshia Khosravi, Kamil Langowski, Michal Sieczczynski, Krzysztof Pastuszak, Anna Supernat, Anna Zaczek2026-07-20
🧬 biology

DHCR24 Regulates Endothelial Senescence through the SPHK2/SPNS2-S1P Axis

This study reveals that DHCR24 deficiency accelerates endothelial senescence by disrupting the SPHK2/SPNS2-S1P axis, which reduces intracellular sphingosine-1-phosphate levels and impairs nitric oxide production, thereby establishing a critical metabolic link between DHCR24 and vascular aging.

Wukaiyang Liang, Zhen Yang, Han Li, Hao Nie, Jie Huang, Tianyi Ji, Zixin Wan, Yucong Zhang, Yi Huang, Le Zhang, Lei Ruan (…)2026-07-20