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Isolation, Identification, and Pharmacological Screening of Leaf and Root Endophytic Bacteria from Avicennia officinalis in the Sundarbans, Bangladesh

This study isolates and identifies endophytic bacteria from *Avicennia officinalis* in the Sundarbans, Bangladesh, demonstrating that the selected *Staphylococcus haemolyticus* strain produces a crude extract with significant antibacterial and cytotoxic properties alongside moderate antioxidant activity, likely attributed to its alkaloid and phenol content.

Original authors: Md. Alomgir Hossain, Sunzida Akter Eva, Sadia Sultana, Mohammad Nazir Hossain

Published 2026-08-20
📖 4 min read☕ Coffee break read

Original authors: Md. Alomgir Hossain, Sunzida Akter Eva, Sadia Sultana, Mohammad Nazir Hossain

Original paper licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). ⚕️ This is an AI-generated explanation of a preprint that has not been peer-reviewed. It is not medical advice. Do not make health decisions based on this content. Read full disclaimer

Deep within the living tissues of plants, hidden from the sun and the soil, lives a vast, invisible community of bacteria. These are not the germs that cause disease, but rather quiet partners known as endophytes. They move inside the plant's roots, stems, and leaves, living there without harming their host. In return, they often produce special chemical compounds that help the plant survive harsh conditions or fight off attackers. Scientists have long suspected that these microscopic neighbors are factories for powerful medicines, capable of creating new antibiotics or cancer-fighting drugs that we have not yet discovered. The question is not just whether these bacteria exist, but what specific chemicals they make and whether those chemicals can be useful to human health.

In the mangrove forests of the Sundarbans in Bangladesh, researchers turned their attention to a specific tree called Avicennia officinalis. This tree thrives in salty, waterlogged soil where few other plants can survive, suggesting it hosts a unique set of microbial partners. A team of scientists from Bangladesh collected leaves and roots from these trees, carefully cleaning the outer surfaces to ensure they were only studying the bacteria living inside. They grew these bacteria in the lab and identified several types, including species of Staphylococcus and Kocuria. From this collection, they selected one specific strain, identified as Staphylococcus haemolyticus, to see what it could do.

The researchers grew this bacteria in large containers of nutrient broth until the population reached a steady state, a time when the bacteria begin to produce their most potent chemical defenses. They then filtered out the bacteria and collected the liquid they had left behind, which contained the secreted chemicals. To test the power of these chemicals, they created a crude extract using alcohol. First, they checked what kinds of compounds were present and found that the extract was rich in alkaloids and phenols, two groups of chemicals often associated with biological activity.

Next, the team put the extract to the test against two common disease-causing bacteria: Escherichia coli and Micrococcus. They placed the bacterial extract into small wells cut into a gel containing the harmful bacteria and watched to see if it stopped their growth. The results showed that the extract could indeed slow down the harmful bacteria, working better at higher concentrations. It was most effective against E. coli, creating a clear zone where the bacteria could not grow, while showing a weaker effect against Micrococcus. This confirmed that the bacteria living inside the mangrove tree produce substances capable of fighting other microbes.

The scientists also tested whether the extract could act as an antioxidant, a substance that neutralizes harmful particles in the body. They mixed the extract with a purple chemical that changes color when it is neutralized. The extract did cause a change, but it required a much larger amount to achieve the same effect as a standard antioxidant like vitamin C. This suggested that while the extract has some antioxidant properties, it is not particularly strong in that regard compared to known standards.

Finally, the team investigated if the extract was toxic to living cells by using a classic test involving brine shrimp, tiny crustaceans that hatch from eggs in salty water. They exposed the shrimp to different amounts of the extract and counted how many died. The results showed that the extract was indeed toxic to the shrimp, killing half of the population at a concentration of 61.7 micrograms per milliliter. This level of toxicity is significant and comparable to a known toxic chemical used as a control in the experiment.

The study concludes that the mangrove tree Avicennia officinalis is a rich source of endophytic bacteria, specifically Staphylococcus haemolyticus, which produces chemicals with the ability to fight other bacteria and show toxicity to simple life forms. While the antioxidant power was modest, the ability to inhibit harmful bacteria and kill brine shrimp suggests these bacteria are producing potent bioactive compounds. The researchers note that while the initial screening is promising, more work is needed to identify the exact chemicals responsible for these effects and to determine if they could eventually lead to new medicines. For now, the hidden world inside the Sundarbans mangroves has revealed a new, potential source of biological power.

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