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A Case of Post-Traumatic Klebsiella variicola Sepsis Complicated by Multisite Invasive Infections (Osteomyelitis, hepatic abscess, and Urinary Tract Infection)

This paper reports the first documented case of a 79-year-old diabetic woman developing post-traumatic *Klebsiella variicola* sepsis with concurrent osteomyelitis, hepatic abscess, and urinary tract infection, highlighting the pathogen's hypervirulent potential and the critical role of metagenomic next-generation sequencing in accurate diagnosis and successful management through targeted antimicrobial therapy and source control.

Original authors: Si‑Min Gao, Shuai Yao, Feng Ma, Wang‑Xi Zhao, Yang‑Xiao Luo, Zhi‑Hua Xu

Published 2026-10-06✓ Author reviewed ⓘ
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Original authors: Si‑Min Gao, Shuai Yao, Feng Ma, Wang‑Xi Zhao, Yang‑Xiao Luo, Zhi‑Hua Xu

Original paper licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). ✨ This is an AI-generated explanation of the paper below. It is not written by the authors. For technical accuracy, refer to the original paper. Read full disclaimer

In the human body, the immune system acts as a constant, vigilant defense force, ready to identify and neutralize invading bacteria. However, this defense can be compromised when a person has a chronic condition like diabetes, where high blood sugar levels can weaken the body's ability to fight off infection. Within the microscopic world of bacteria, there is a group of organisms known as the Klebsiella family. For decades, doctors have relied on standard laboratory tests to identify these invaders, but these tests often struggle to tell apart very similar species. One such species, Klebsiella variicola, is frequently mistaken for its more common cousin, Klebsiella pneumoniae. While both can cause serious illness, the specific identity of the bacteria matters greatly because it influences how the infection spreads and how doctors should treat it. Understanding the true nature of these pathogens is critical, especially when they cause infections that seem to appear out of nowhere or spread rapidly through the body.

A recent case report from a hospital in China brings this hidden danger into sharp focus, describing a severe and unusual infection in a 79-year-old woman. The patient had a long history of type 2 diabetes that was not well controlled, a condition that left her vulnerable to infection. She arrived at the hospital complaining of pain and swelling in her right shoulder after a fall. Initially, the injury seemed like a simple trauma, but her condition deteriorated with alarming speed. Within a short time, she developed sepsis, a life-threatening reaction to infection that caused her blood pressure to drop dangerously low and her organs to begin failing. She was rushed to the intensive care unit, where doctors found that her infection had spread far beyond her shoulder. Imaging scans revealed that gas, a sign of aggressive bacterial activity, had formed inside the bone marrow of her collarbone and shoulder blade. The infection had also created a pocket of pus in her liver, and the same organism was isolated from her urine.

The medical team faced a difficult challenge: identifying the exact cause of this widespread devastation. Standard laboratory cultures, which grow bacteria from samples of blood, bone marrow, and pus, initially pointed to a common type of Klebsiella. However, these traditional methods are known to be imprecise when distinguishing between closely related bacterial species. To solve this puzzle, the doctors turned to a more advanced technique called metagenomic next-generation sequencing. This method reads the genetic material directly from a blood sample, allowing for a much more precise identification of the organism. The test revealed that the culprit was not the common Klebsiella pneumoniae, but rather Klebsiella variicola. The genetic analysis found thousands of unique genetic signatures specific to this species, confirming that it was the primary driver of the infection.

Once the true identity of the bacteria was established, the treatment plan became clearer. The patient was started on strong intravenous antibiotics, specifically a drug called imipenem-cilastatin, which is effective against many types of bacteria. As her condition stabilized and the bacteria were confirmed to be sensitive to the medication, the doctors adjusted the treatment to a different antibiotic, piperacillin-tazobactam. Crucially, medication alone was not enough. Because the infection had created pockets of pus in her liver and fluid in her lungs, doctors performed procedures to drain these areas physically. They used ultrasound and CT scans to guide thin tubes into the liver abscess and the chest cavity, removing the infected fluid. This combination of targeted antibiotics and physical drainage allowed the infection to subside. Over the course of ten days, the gas inside her bones disappeared, her liver abscess shrank, and her vital signs returned to normal, allowing her to move from the intensive care unit back to a regular ward.

This case is significant because it documents the first confirmed instance of Klebsiella variicola causing bone infection, or osteomyelitis, following a minor injury. While this bacterium is known to cause liver abscesses and bloodstream infections, this specific presentation of bone infection had not been previously reported in the medical literature. The report highlights that this specific bacterium can act with the same aggressive, invasive power as the most dangerous strains of Klebsiella pneumoniae, even though standard lab tests often miss it. The findings suggest that in patients with diabetes who suffer even minor trauma, doctors must remain vigilant for deep-seated infections that may spread quickly. It also demonstrates that when standard tests fail to provide a clear answer, advanced genetic sequencing can be the key to identifying the true pathogen, ensuring that patients receive the precise care they need to survive.

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