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Influence of Flow Regulation on Phytoplankton Biomass and Composition Along the Salinity Ecocline: Caloosahatchee River Estuary, Florida, USA​

This study demonstrates that varying discharge volumes from the C-43 Canal in Florida's Caloosahatchee River Estuary drive distinct shifts in phytoplankton composition and harmful algal bloom patterns along the salinity gradient, suggesting that optimized flow regulation could mitigate bloom intensity and duration.

Original authors: Benjamin D. Stelling, Edward J. Phlips, Susan Badylak, Eric C. Milbrandt, Shin-Ah Lee, Leslie Landauer, Madelynn Busch, Elise S. Morrison, Mauricio E. Arias, David Kaplan

Published 2026-09-11
📖 6 min read🧠 Deep dive

Original authors: Benjamin D. Stelling, Edward J. Phlips, Susan Badylak, Eric C. Milbrandt, Shin-Ah Lee, Leslie Landauer, Madelynn Busch, Elise S. Morrison, Mauricio E. Arias, David Kaplan

Original paper licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). ✨ This is an AI-generated explanation of the paper below. It is not written or endorsed by the authors. For technical accuracy, refer to the original paper. Read full disclaimer

The water where a river meets the sea is a place of constant negotiation. Freshwater from the land pushes against the saltwater of the ocean, creating a shifting boundary where the chemistry of the water changes from one end to the other. This boundary, known as a salinity gradient, acts as a filter for the microscopic plants that drift in the currents. Some of these plants, called phytoplankton, thrive only in fresh water, while others require salt. When the balance of water changes, the community of plants changes with it. In many places, this natural rhythm is disrupted by human management. Dams and canals control how much fresh water flows into the estuary, often ignoring the natural wet and dry seasons. This regulation can trap nutrients in the water or flush them out too quickly, creating conditions that allow certain plants to grow out of control. When these microscopic plants multiply rapidly, they form blooms. Some of these blooms are harmless, but others produce toxins that can kill fish, sicken animals, and make the water dangerous for people. Understanding how the flow of water controls these blooms is essential for protecting coastal ecosystems.

In the Caloosahatchee River Estuary in Florida, researchers set out to understand how the management of water flow influences these microscopic communities. The estuary is connected to Lake Okeechobee, a large lake to the east that is rich in nutrients and frequently experiences blooms of toxic blue-green algae. A canal, known as the C-43, carries water from the lake to the river. At the point where the canal meets the estuary, a large water control structure, the S-79, acts as a gate. The U.S. Army Corps of Engineers and local water managers decide when to open this gate and how much water to release. The goal is often to prevent flooding or to supply water for agriculture, but these decisions have profound effects on the biology of the estuary. The researchers wanted to know if changing the amount of water released from this gate could change which types of microscopic plants dominate the water and whether it could reduce the risk of harmful blooms.

To find the answers, the team looked at data collected over three distinct time periods between 2009 and 2024. They sampled water at eight different locations, stretching from the canal gate all the way out to the open Gulf of Mexico. At each spot, they measured the saltiness of the water, the amount of nutrients, and the types and numbers of microscopic plants present. They compared periods when the water flow was low or moderate with periods when the flow was high. The study revealed that the amount of water released from the canal acts as a switch that changes the entire ecosystem.

When the flow of water was low or moderate, the saltwater from the Gulf pushed further up the river. This created a zone of brackish water, a mix of fresh and salt, in the upper part of the estuary. In these conditions, a specific type of microscopic plant called a dinoflagellate, known as Akashiwo sanguinea, grew into massive blooms. This plant is a generalist that can tolerate a wide range of salt levels. During the years with lower flow, these blooms became so dense that they turned the water a thick, milky color and, in some cases, caused the oxygen levels in the water to drop dangerously low, threatening fish and other marine life.

Conversely, when the water flow was high, the fresh water from the canal pushed the saltwater back toward the ocean. This extended the fresh water zone far down the river. In these conditions, the upper part of the estuary became dominated by blue-green algae, specifically the same toxic types that often bloom in Lake Okeechobee. These plants, including Microcystis aeruginosa, are carried down the canal and thrive in the fresh water. When the flow is high, they are transported deep into the estuary, bringing their toxins with them. The study found that high discharge rates also carried large amounts of nutrients into the Gulf of Mexico. This influx of nutrients, combined with the warm water and the disturbance of storms like hurricanes, fueled intense blooms of the red tide organism Karenia brevis in the coastal waters near the mouth of the river.

The researchers observed that the timing and volume of the water release are critical. In the third period of their study, from 2021 to 2024, water managers maintained consistently high discharge rates. This kept the upper estuary fresh for longer periods, allowing the toxic blue-green algae from the lake to establish themselves and spread. In the lower estuary and the Gulf, the high flow brought a steady supply of nutrients that supported large blooms of red tide algae, particularly during the hurricane seasons of 2022 and 2024. The study showed that there is no single flow rate that is perfect for every situation. Low flows allow brackish-water dinoflagellates to bloom in the river, while high flows push toxic freshwater algae into the river and feed red tides in the ocean.

The findings suggest that managing the water control structures could be a powerful tool for reducing the severity of these harmful blooms. By adjusting the flow, managers could potentially shorten the time the water sits in the estuary, flushing out the plants before they can grow into massive blooms. They could also try to limit the amount of toxic blue-green algae from the lake entering the river during peak bloom seasons. However, the study also highlights the complexity of the system. The source of the water matters as much as the volume. During dry seasons, the water released often comes directly from Lake Okeechobee, carrying high levels of nitrogen, a nutrient that fuels plant growth. In wet seasons, the water comes more from the surrounding land, bringing different nutrients. The researchers noted that simply changing the flow is not a magic solution, but it is a lever that can be pulled to alter the salinity, the residence time of the water, and the nutrient load.

Ultimately, the study demonstrates that the health of the Caloosahatchee Estuary is inextricably linked to how water is managed upstream. The microscopic plants that drift in the currents are responding directly to the decisions made at the water control gate. By understanding these responses, managers can make more informed choices to protect the estuary from the worst effects of toxic blooms, balancing the needs of flood control and water supply with the biological needs of the river and the sea. The work confirms that in a flow-regulated ecosystem, the rhythm of the water dictates the rhythm of life, and changing that rhythm changes the community that lives there.

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