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Phenotypic and Genotypic Characterization of Antimicrobial-Resistant Bacillus spp. Isolated from Fresh Vegetables in Ogun State, Nigeria: Relevance to Foodborne AMR

This study reveals that fresh vegetables in Ogun State, Nigeria, are contaminated with antimicrobial-resistant *Bacillus* spp. exhibiting high resistance to critical antibiotics and carrying virulence and resistance genes like *blaTEM*, underscoring a significant food safety risk that necessitates enhanced surveillance and hygiene practices.

Original authors: Itohan Ebunoluwa Abatan, Lenis Saweda Liverpool-Tasie, Taofik Akinyemi Shittu, Adebukunola Mobolaji Omemu, Muinah Adenike Fowora, Adewale Olusegun Obadina

Published 2026-10-12
📖 4 min read☕ Coffee break read

Original authors: Itohan Ebunoluwa Abatan, Lenis Saweda Liverpool-Tasie, Taofik Akinyemi Shittu, Adebukunola Mobolaji Omemu, Muinah Adenike Fowora, Adewale Olusegun Obadina

Original paper licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). ✨ This is an AI-generated explanation of the paper below. It is not written or endorsed by the authors. For technical accuracy, refer to the original paper. Read full disclaimer

Fresh vegetables are a cornerstone of a healthy diet, offering essential nutrients and vibrant flavors. Yet, because they are often eaten raw or with minimal cooking, they can also act as silent carriers for microscopic life. Unlike cooked foods, where heat destroys many harmful organisms, raw produce provides a direct path for bacteria to enter the human body. Among these microscopic travelers are Bacillus species, a group of bacteria found naturally in soil, water, and on plants. While many strains are harmless or even beneficial, some can cause illness or carry traits that make them resistant to medicines designed to kill them. When these bacteria move from the farm to the market and finally to a plate, they can introduce a hidden risk: the possibility that if a person gets sick, the standard treatments might no longer work. This concern has led scientists to investigate whether the vegetables we buy at local markets are harboring these resistant bacteria and, if so, how widespread the problem might be.

In a recent study focused on Ogun State in Nigeria, researchers set out to examine this exact question. They collected 509 samples of fresh vegetables, including tomatoes, carrots, and cucumbers, from markets across three different regions of the state. The team gathered these samples at different times of the year to see if the season influenced what they found. Once in the laboratory, they carefully processed the vegetables to see if Bacillus bacteria were present. They found that the bacteria were indeed there, appearing in 74 of the samples. The cucumbers were the most likely to carry the bacteria, followed by tomatoes, while carrots were the least likely to be contaminated. The study also revealed that the dry season seemed to bring a higher presence of these bacteria compared to the rainy months, suggesting that environmental conditions play a significant role in how these microbes spread through the food supply.

The researchers did not stop at simply counting the bacteria; they wanted to know if these specific strains were dangerous. They tested 58 representative samples against a wide range of antibiotics, the medicines used to treat bacterial infections. The results were striking. The bacteria showed very high resistance to several powerful drugs, including oxacillin, vancomycin, ceftriaxone, and meropenem. In fact, nearly all the bacteria tested were resistant to oxacillin and vancomycin, and a large majority were resistant to ceftriaxone and meropenem. This means that if a person were infected by these specific strains, these common and critical medicines might fail to stop the infection. However, the bacteria were less resistant to other antibiotics, such as ampicillin and gentamicin, showing that the problem is not uniform across all drugs.

To understand why the bacteria were resisting these medicines, the scientists looked inside the bacteria's genetic code. They searched for specific genes that act as blueprints for resistance. They found that every single one of the 58 bacteria carried a gene called blaTEM, which is known to help bacteria break down certain antibiotics. They also found another resistance gene, blaSHV, in about a quarter of the samples. Interestingly, while the bacteria were highly resistant to the drug meropenem in the lab tests, the researchers could not find the specific genes usually responsible for that kind of resistance. This suggests that the bacteria might be using a different, unknown method to survive the drug, or that the resistance genes they carry are not always active. The study also looked for genes that make bacteria more dangerous by producing toxins. They found a few strains carrying genes for toxins that can cause diarrhea, but these were rare.

The findings paint a clear picture of a food safety challenge that is already present in the local vegetable supply. The study confirms that fresh vegetables in this region are not just growing in soil; they are also picking up bacteria that have learned to survive powerful medicines. The fact that these resistant bacteria were found in such high numbers, particularly in cucumbers and tomatoes, suggests that the journey from farm to fork is a critical point where these microbes can spread. The researchers noted that the way vegetables are handled, the water used for irrigation, and the conditions in the markets all contribute to this contamination. While the study did not find every possible type of resistance gene, the presence of the ones they did find, combined with the high levels of resistance seen in the lab tests, is a serious warning. It highlights the need for better hygiene practices during farming and selling, cleaner water sources, and continued monitoring to ensure that the food people eat remains safe and that the medicines used to treat illness remain effective.

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